Academic

Metmicrobome Literature Sumamry

1 Predictive metabolomic profiling of microbial communities using amplicon or metagenomic sequences 1.1 Methods 1.1.1 Training and validation cohort descriptions 1.1.2 Taxonomic and functional profiling 1.1.3 Metabolite profiling 1.1.4 Elastic net regularization 1.1.5 Significance testing with shuffled data 1.1.6 Gene set enrichment analysis 1 Predictive metabolomic profiling of microbial communities using amplicon or metagenomic sequences 开发的软件名字叫做Melonn

Maternal urinary metabolic signatures of fetal growth and associated clinical and environmental factors in the INMA study文献阅读总结

1 Abstract 2 Methods 2.1 Study population 2.2 Definition of the fetal and birth measurements 2.3 Metabolic profiling by NMR 2.4 Statistical analysis 2.4.1 Step 1. Identify main sources of metabolic variation between first and third trimesters of gestation 2.4.2 Step 2. Identify metabolites associated with fetal growth 2.4.3 Step 3. Assess the extent to which the metabolite panel associated with fetal growth can be explained by known growth-related factors

怀孕基础知识总结

1 孕龄(gestational age,GA)的计算 因为要做跟怀孕相关的项目,所以把一些基础的怀孕知识做一下总结. 1 孕龄(gestationa

Machine for genomics conference

0.0.1 Machine learning for biomedical information freenome freenome intergateing innovative science to develop a blood-based cancer test starting with CRC. cfDNA (cell free DNA). Interpreting deep learning models of regulatory DNA Anshul Kundaje decoding genome function control elements gene ATAC-seq/DNase-seq ChIP-seq prediCtive model of regularity DNA Just transform DNA sequence to dummy matrxi. 0.0.1 Machine learning for biomedical information hierarchical latent variable models?

Docker的安装使用和配置

将自己安装docker,使用以及配置记录下来,主要还包括常用的命令总结以及一些bug的处理,以及一些常见资源.

R语言常见统计预测模型

0.0.1 lasso模型 0.0.2 References 0.0.1 lasso模型 LASSO回归的特点是在拟合广义线性模型的同时进行变量筛选(variable selection)和复杂度

网络分析之igraph

0.0.1 安装 0.0.2 常用功能总结 0.0.3 从data frame转变为``igraph对象 igraph是一些列网络分析工具的集合.开源且免费,拥有R, Python

R可视化之小提琴图

0.1 基础小提琴图绘制 0.1.1 使用ggplot2包中的geom_violin()函数. 0.2 将小提琴图水平展示 0.3 小提琴图与箱型图同时展示 本文翻译自“The

R可视化之桑吉图

0.1 使用networkD3包构建桑吉图 0.1.1 基础桑吉图绘制 0.1.2 另外一个例子 0.1.3 使用ggalluvial包绘制桑吉图 本文翻译自“The graph gallery”

pregnancy project文献阅读总结

1 Google key work search 1.1 Urinary metabolic variation analysis during pregnancy and application in Gestational Diabetes Mellitus and spontaneous abortion biomarker discovery 1.2 Metabolic profiling of pregnancy: cross- sectional and longitudinal evidence 1.3 Maternal urinary metabolic signatures of fetal growth and associated clinical and environmental factors in the INMA study 1.3.1 结论 1.3.2 Study population 1.3.3 Definition of the fetal and birth measurements 1.4 Variants in the fetal