Main
Xiatao Shen Ph.D.
A Postdoc Research Fellow at Stanford University
I am now a postdoctoral research fellow at Stanford University. I am broadly interested in Metabolomics, Multi-omics, Biostatistics, Systems Biology, and Bioinformatics, and their application in healthcare.
Education
Chinese Academy of Sciences
Ph.D. Student in Metabolomics and Bioinformatics
Shanghai, China
Sep. 2013 - Dec. 2018
Advisor: Dr. Zheng-Jiang Zhu
Inner Mongolia University
B.S. in Biotechnology
Hohhot, China
Sep. 2009 - Jun. 2013
Advisor: Dr. Pengxia Liu
Research Experience
Postdoctoral Research Fellow
Stanford University School of Medicine
Palo Alto, USA
Apr. 2019.4 - Present
Advisor: Dr. Michael Snyder
Research interset
Metabolomics Data Processing Methods and Software Development.
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Multi-omics Data Analysis for Biomarker Discovery for Diseases.
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HONORS AND AWARDS
Student Travel Award for Oral Presentation
The International Metabolomics Society
Seattle, USA
Jun. 2018
International Conference Travel Award
The Metabolites Journal
Seattle, USA
Jun. 2018
China National Scholarship
Ministry of Education of the People’s Republic of China
Shanghai, China
Dec. 2017
Award for Outstanding Youth Report
The 3th China Mass Spectrometry Analysis Conference
Xiamen, China
Dec. 2017
Merit Student
University of Chinese Academy of Sciences
Shanghai, China
Jun. 2016
Award for Outstanding Youth Report
The 34th China Mass Spectrometry Society Conference
Xining, China
Sep. 2016
Inner Mongolia Outstanding Graduate
Inner Mongolia Autonomous Region
Hohhot, China
Jun. 2013
National Encouragement Scholarship
Inner Mongolia University
Hohhot, China
Jun. 2011
Publications
Development of A Correlative Strategy to Discover Colorectal Tumor Tissue Derived Metabolite Biomarkers in Plasma Using Untargeted Metabolomics
Analytical Chemistry, 2019, 91, 3, 2401-2408.
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2019
Z. Wang, B. Cui, F. Zhang, Y. Yang, X. Shen, Z. Li, W. Zhao, Y. Zhang, K. Deng, Z. Rong, K. Yang, X. Yu, K. Li, P. Han, and Z.-J. Zhu.
Large-scale Metabolite Identification for Untargeted Metabolomics Using Metabolic Reaction Network
Nature Communications, 2019, 10:1516.
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2019
X. Shen, R. Wang, X. Xiong, Y. Yin, Y. Cai, J. Ma, N. Liu and Z.-J. Zhu.
MetFlow: An interactive and integrated workflow for metabolomics data cleaning and differential metabolite discovery
Bioinformatics, Volume 35, Issue 16, 15 August 2019, Pages 2870–2872.
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2019
X. Shen and Z.-J. Zhu.
LipidIMMS Analyzer: Integrating Multi-dimensional Information to Support Lipid Identification in Ion Mobility–Mass Spectrometry based Lipidomics
Bioinformatics, Volume 35, Issue 4, 15 February 2019, Pages 698–700.
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2018
Z. Zhou, X. Shen, X. Chen, J. Tu, X. Xiong, and Z.-J. Zhu.
Assessment of The Response to Neoadjuvant Chemo-Radiation in Rectal Cancer Patients based on A Metabolomics Approach
Radiotherapy and Oncology, 2018, 128, 548-556.
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2018
H. Jia, X. Shen (Co-first author), Y. Guan, M. Xu, M. Mo, J. Zhu and Z.-J. Zhu.
LipidCCS: Prediction of Collision CrossSection Values for Lipids with High Precision to Support Ion Mobility-Mass Spectrometry based Lipidomics
Analytical Chemistry, 2017, 89, 9559–9566.
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2018
Z. Zhou, J. Tu, X. Xiong, X. Shen, and Z.-J. Zhu.
Large-Scale Prediction of Collision Cross-Section Values for Metabolites in Ion Mobility - Mass Spectrometry
Analytical Chemistry, 2016, 88, 11084-11091.
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2016
Z. Zhou, X. Shen, J. Tu, and Z.-J. Zhu.
Serum Metabolomics for Early Diagnosis of Esophageal Squamous Cell Carcinoma by UHPLC-QTOF/MS
Metabolomics, 2016, 12: 116.
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2016
J. Wang, T. Zhang, X. Shen (Co-first author), J. Liu, D. Zhao, Y. Sun, L. Wang, Y. Liu, X. Gong, Y. Liu, Z.-J. Zhu, F. Xue.
Normalization and Integration of Large-Scale Metabolomics Data Using Support Vector Regression
Metabolomics, 2016, 12: 89.
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2016
X. Shen, X. Gong, Y. Cai, Y. Guo, J. Tu, H. Li, T. Zhang, J. Wang, F. Xue, and Z.-J. Zhu.
ORAL PRESENTATIONS
Metabolic Reaction Network-based Recursive Metabolite Identification for Untargeted Metabolomics
The 14th International Conference of the Metabolomics Society
Seattle, USA
Jun. 2018
Assessment of the Response to Neoadjuvant Chemo-Radiation in Rectal Cancer Patients based on a Metabolomics Approach.
The 3th China Mass Spectrometry Analysis Conference
Xiamen, China
Dec. 2017
Normalization and Integration of Large-Scale Mass Spectrometry-based Metabolomics Data Using Support Vector Regression
The 34th China Mass Spectrometry Society Conference
Xining, Qinghai
Sep. 2016
Normalization and Integration of Large-Scale Mass Spectrometry-based Metabolomics Data Using Support Vector Regression
The 64th American Society for Mass Spectrometry Conference
San Antonio, USA
Jun. 2016
POSTERS PRESENTATION
Metabolic Reaction Network based Metabolite Annotation in Untargeted Metabolomics
The 13th International Conference of the Metabolomics Society
Brisbane, Austria
Jun. 2017